! obsolute information. be rewritten soon.

  1. example of reactor compile command
    • get FluxReactor.hpp? , MichaelisUniUniReactor.cpp? , MichaelisUniUniReactor.hpp? and compile these.
      % /home/kem/wrk/ecell3/bin/dmcompile MichaelisUniUniReactor.cpp \
      -I /home/kem/wrk/ecell3/include/ \
      -I /home/kem/wrk/ecell3/include/ecell
      
      B) "/home/kem/wrk/ecell3" is a directory which is difined for "--prefix=" of "autogen.sh" command when install ecell3
  2. Run with Osogo GUI
  • get test script
% cp /home/kem/wrk/ecell3/lib/osogo/A-sample-rule.py .}}}
  * run ecell3 with gui
   {{{
% /home/kem/wrk/ecell3/bin/gecell}}}
   
  * [File]-[Load Rule...]
   * select "A-sample-rule.py"

 1. Run in script mode

  * get ["test.py"] or ["simple.py"]

  * edit the scripts to meet purpose of your test run.  No need to modify them if you are just checking it is working.

  * bin/ecell3 test.py or simple.py
}}}